| | Blue Line - Old Town to San Ysidro/Tijuana | San Diego MTS Light Rail |
| | Green Line - Old Town to Santee | San Diego MTS Light Rail |
| | Orange Line - Convention Ctr to Gillespie Field | San Diego MTS Light Rail |
| | COASTER - San Diego to Oceanside | North County Transit District Train |
| | SPRINTER - Oceanside to Escondido | North County Transit District Train |
| 1 | Hillcrest - Grossmont Trolley | San Diego MTS Bus |
| 2 | Downtown - North Park | San Diego MTS Bus |
| 3 | UCSD Medical Center / Hillcrest - Euclid Trolley | San Diego MTS Bus |
| 4 | Lomita Village - 12th & Imperial Transit Center | San Diego MTS Bus |
| 5 | Euclid Trolley - Downtown San Diego / 10th & Broadway | San Diego MTS Bus |
| 6 | Fashion Valley - North Park - Fashion Valley | San Diego MTS Bus |
| 7 | La Mesa - Downtown | San Diego MTS Bus |
| 8 | Pacific Beach - Old Town | San Diego MTS Bus |
| 9 | Pacific Beach - Old Town | San Diego MTS Bus |
| 10 | University & College - Old Town | San Diego MTS Bus |
| 11 | Skyline Hills - SDSU | San Diego MTS Bus |
| 13 | Kaiser Hospital / Grantville Trolley - 24th St Trolley | San Diego MTS Bus |
| 14 | Grantville Trolley - Baltimore & Lake Murray | San Diego MTS Bus |
| 18 | Grantville - Camino del Rio - Grantville | San Diego MTS Bus |
| 20 | Del Lago Station - Downtown San Diego | San Diego MTS Bus |
| 25 | Kearny Mesa Transit Center - Fashion Valley Transit Center | San Diego MTS Bus |
| 27 | Kearny Mesa Transit Center - Pacific Beach | San Diego MTS Bus |
| 28 | Shelter Island - Old Town Transit Center | San Diego MTS Bus |
| 30 | UTC / VA Medical Center - Downtown | San Diego MTS Bus |
| 31 | Mira Mesa - UTC Transit Center | San Diego MTS Bus |
| 35 | Old Town Transit Center - Ocean Beach | San Diego MTS Bus |
| 41 | UCSD / VA Hospital - Fashion Valley Transit Center | San Diego MTS Bus |
| 44 | Clairemont Sq - Old Town | San Diego MTS Bus |
| 50 | Downtown - UTC Express | San Diego MTS Bus |
| 60 | UTC - Euclid Ave | San Diego MTS Bus |
| 83 | Downtown - Mission Hills / Hillcrest | San Diego MTS Bus |
| 84 | Cabrillo Monument - Sub Base | San Diego MTS Bus |
| 88 | Fashion Valley Transit Center - Old Town Transit Center | San Diego MTS Bus |
| 101 | Oceanside to VA / UTC | North County Transit District Bus |
| 105 | Old Town Transit Center - UTC | San Diego MTS Bus |
| 110 | Camino Santa Fe & Flanders - India & C | San Diego MTS Bus |
| 115 | SDSU Transit Center - El Cajon Transit Center | San Diego MTS Bus |
| 120 | Kearny Mesa Transit Center - Downtown | San Diego MTS Bus |
| 150 | UTC / VA Hospital - Downtown | San Diego MTS Bus |
| 170 | City Heights - City College | San Diego MTS Bus |
| 201 | UTC Transit Center - UCSD SuperLoop | San Diego MTS Bus |
| 202 | UTC Transit Center - UCSD SuperLoop | San Diego MTS Bus |
| 204 | UTC East Loop | San Diego MTS Bus |
| 215 | Rapid 215 | San Diego MTS Bus |
| 235 | Rapid 235 | San Diego MTS Bus |
| 237 | Rapid 237 | San Diego MTS Bus |
| 270 | Sorrento Valley - Rancho Bernardo Transit Station | San Diego MTS Bus |
| 280 | Downtown San Diego - Escondido Transit Center | San Diego MTS Bus |
| 290 | Downtown San Diego - Rancho Bernardo Transit Statio | San Diego MTS Bus |
| 302 | Oceanside to Vista Transit Center | North County Transit District Bus |
| 303 | Oceanside to Vista | North County Transit District Bus |
| 304 | Encinitas to San Marcos | North County Transit District Bus |
| 305 | Escondido to Vista | North County Transit District Bus |
| 306 | Fallbrook to Vista | North County Transit District Bus |
| 308 | Solana Beach to Escondido | North County Transit District Bus |
| 309 | Oceanside to Encinitas | North County Transit District Bus |
| 311 | East Oceanside to Rancho Del Oro Station | North County Transit District Bus |
| 313 | Oceanside to Town Center North | North County Transit District Bus |
| 315 | College Blvd SPRINTER Station to 22 Area | North County Transit District Bus |
| 316 | Ocean Ranch Shuttle | North County Transit District Bus |
| 318 | Oceanside to Vista | North County Transit District Bus |
| 323 | College Blvd. SPRINTER Station to Quarry Creek/Plaza Camino Real | North County Transit District Bus |
| 325 | Carlsbad Village to College Blvd SPRINTER Station | North County Transit District Bus |
| 331 | Vista to Buena Creek | North County Transit District Bus |
| 332 | Vista to Buena Creek | North County Transit District Bus |
| 334 | Vista Circulator | North County Transit District Bus |
| 335 | Vista Circulator | North County Transit District Bus |
| 341 | San Marcos Civic Centre - Mata & Rancheros | North County Transit District Bus |
| 342 | | North County Transit District Bus |
| 347 | Cal State San Marcos to Palomar College | North County Transit District Bus |
| 350 | Escondido to Del Lago Transit Station | North County Transit District Bus |
| 351 | Escondido Circulator | North County Transit District Bus |
| 352 | Escondido Circulator | North County Transit District Bus |
| 353 | Palomar Medical Center to Nordahl Marketplace | North County Transit District Bus |
| 354 | Orange Glen High School | North County Transit District Bus |
| 355 | El Norte Pkwy & Valley Pkwy | North County Transit District Bus |
| 356 | Morning View Dr, El Norte Pkwy & Escondido Blvd | North County Transit District Bus |
| 357 | El Norte Pkwy & Valley Pkwy | North County Transit District Bus |
| 358 | N Broadway, Country Club & El Norte Pkwy | North County Transit District Bus |
| 359 | N Broadway, Country Club & El Norte Pkwy | North County Transit District Bus |
| 371 | FLEX Ramona Commuter | North County Transit District Bus |
| 388 | Escondido to Pala | North County Transit District Bus |
| 389 | Escondido to Pala | North County Transit District Bus |
| 392 | Oceanside TC to Naval Hospital Camp Pendleton | North County Transit District Bus |
| 395 | Oceanside to San Clemente | North County Transit District Bus |
| 444 | Carlsbad Poinsettia COASTER Connection | North County Transit District Bus |
| 445 | Carlsbad Poinsettia COASTER Connection to Palomar College | North County Transit District Bus |
| 446 | Carlsbad Poinsettia COASTER Connection to Legoland | North County Transit District Bus |
| 701 | H Street Trolley - Palomar Street Trolley | San Diego MTS Bus |
| 703 | Otay Ranch Town Center - H Street Trolley | San Diego MTS Bus |
| 704 | Bayfront / E Street Trolley - Palomar Street Trolley | San Diego MTS Bus |
| 705 | Southwestern College - Bayfront / E Street Trolley | San Diego MTS Bus |
| 707 | Southwestern College - Otay Ranch Town Center | San Diego MTS Bus |
| 709 | Southwestern College / Eastlake - H St. Trolley | San Diego MTS Bus |
| 712 | Southwestern College - Palomar St. Trolley Station | San Diego MTS Bus |
| 815 | Broadway & East Main - El Cajon Transit Center | San Diego MTS Bus |
| 816 | Broadway & East Main - El Cajon Transit Center | San Diego MTS Bus |
| 832 | Cuyamaca St - Magnolia Av - Santee Trolley | San Diego MTS Bus |
| 833 | El Cajon Transit Center - Santee Trolley Station | San Diego MTS Bus |
| 834 | Santee Trolley - West Santee - Santee Trolley | San Diego MTS Bus |
| 848 | Lakeside - El Cajon Transit Center | San Diego MTS Bus |
| 851 | Spring Street Trolley - Spring Valley | San Diego MTS Bus |
| 854 | Grossmont College - Grossmont Transit Center | San Diego MTS Bus |
| 855 | Spring Street Trolley - Rancho San Diego | San Diego MTS Bus |
| 856 | Cuyamaca College - SDSU Transit Center | San Diego MTS Bus |
| 864 | Viejas / Alpine - El Cajon Transit Center | San Diego MTS Bus |
| 870 | El Cajon / Santee Express - Kearny Mesa Express | San Diego MTS Bus |
| 871 | Ballantyne St - Civic Ctr - Magnolia Av - El Cajon TC | San Diego MTS Bus |
| 872 | Ballantyne St - Civic Ctr - Magnolia Av - El Cajon TC | San Diego MTS Bus |
| 874 | Broadway - Granite Hills - Washington - El Cajon TC | San Diego MTS Bus |
| 875 | Broadway - Granite Hills - Washington - El Cajon TC | San Diego MTS Bus |
| 888 | Jacumba / Campo - El Cajon | San Diego MTS Bus |
| 891 | Borrego Springs via Shelter Valley - El Cajon | San Diego MTS Bus |
| 892 | Borrego Springs via Ranchita - El Cajon | San Diego MTS Bus |
| 894 | Tecate - Campo - Morena Village - El Cajon | San Diego MTS Bus |
| 901 | Downtown San Diego - Iris Trolley | San Diego MTS Bus |
| 904 | Ferry Landing - City Hall | San Diego MTS Bus |
| 905 | Otay Mesa - Iris Trolley | San Diego MTS Bus |
| 906 | San Ysidro / International Border - Iris Trolley | San Diego MTS Bus |
| 907 | San Ysidro / International Border - Iris Trolley | San Diego MTS Bus |
| 916 | Streamview - College Grove - Massachusetts Av - Euclid | San Diego MTS Bus |
| 917 | Streamview - College Grove - Massachusetts Av - Euclid | San Diego MTS Bus |
| 921 | Mira Mesa - UCSD / VA Hospital | San Diego MTS Bus |
| 923 | Ocean Beach - Downtown | San Diego MTS Bus |
| 928 | Kearny Mesa Transit Center - Fashion Valley Transit Center | San Diego MTS Bus |
| 929 | Downtown SD / SD Centro - Iris Trolley | San Diego MTS Bus |
| 932 | 8th St Trolley - San Ysidro | San Diego MTS Bus |
| 933 | Walmart - Palm Av - Seacoast - IB Blvd - Iris | San Diego MTS Bus |
| 934 | Walmart - Palm Av - Seacoast - IB Blvd - Iris | San Diego MTS Bus |
| 936 | SDSU Transit Center - Spring Valley | San Diego MTS Bus |
| 944 | Poway & Garden - Sabre Springs | San Diego MTS Bus |
| 945 | Rancho Bernardo - Old Poway Park | San Diego MTS Bus |
| 945A | Poway Loop | San Diego MTS Bus |
| 950 | Otay Mesa - Iris Trolley | San Diego MTS Bus |
| 955 | SDSU Transit Center - 8th Street Trolley | San Diego MTS Bus |
| 961 | Encanto / 62nd Street Trolley - 24th Street Trolley | San Diego MTS Bus |
| 962 | Spring Valley - 8th Street Trolley | San Diego MTS Bus |
| 963 | 8th Street Trolley - Plaza Bonita | San Diego MTS Bus |
| 964 | Camino Ruiz & Capricorn - Alliant University | San Diego MTS Bus |
| 965 | Azelea Park - Home Ave - City Hts Retail Village - I-15 | San Diego MTS Bus |
| 967 | D & Division - Ava St - Division & D - 24th St Trolley | San Diego MTS Bus |
| 968 | D & Division - Ava St - Division & D - 24th St Trolley | San Diego MTS Bus |
| 972 | Sorrento Mesa | San Diego MTS Bus |
| 973 | Carroll Canyon | San Diego MTS Bus |
| 978 | Torrey Pines | San Diego MTS Bus |
| 979 | North University City | San Diego MTS Bus |
| 992 | Downtown - Airport | San Diego MTS Bus |
| | Coronado Ferry | San Diego MTS Ferry |